State Estimation

Upload a file containing single-cell RNASeq data, where each row is a gene and each column is a cell.

Sample Data

Example dense matrix file: real data (Islam 2011), k=2

Example dense matrix file: synthetic data, k=3

Example dense matrix file: branching synthetic data, k=3

Example sparse matrix file: actual data (10x pooled), 400 cells, k=8

Example gene names file: 10x pooled

Method Details

This runs UNCURL state estimation on the given dataset, and returns an interactive visualization of the identified cell types. For details on the method, see

Data Input