State Estimation

Upload a file containing single-cell RNASeq data, where each row is a gene and each column is a cell.

Sample Data

Example dense matrix file: real data (Islam 2011), k=2

Example dense matrix file: synthetic data, k=3

Example dense matrix file: branching synthetic data, k=3

Example sparse matrix file: actual data (10x pooled), 400 cells, k=8

Example gene names file: 10x pooled

Method Details

This runs UNCURL state estimation on the given dataset, and returns an interactive visualization of the identified cell types. For details on the method, see https://academic.oup.com/bioinformatics/article/34/13/i124/5045758

Data Input