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UNCURL-App is a unified framework for interactively analyzing single-cell RNA-seq data. It is based on UNCURL for data preprocessing and clustering. It can be used to perform a variety of tasks such as:

If your data is smaller than 150MB, you can use the server at uncurl.cs.washington.edu. Otherwise, you should use the Docker image.

Source code (web app)

Source code (UNCURL)


Zhang, Yue*, Shunfu Mao*, Sumit Mukherjee, Sreeram Kannan, and Georg Seelig. “UNCURL-App: Interactive Database-Driven Analysis of Single Cell RNA Sequencing Data.” BioRxiv, April 16, 2020, 2020.04.15.043737. https://doi.org/10.1101/2020.04.15.043737.